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PURE: Plant Universal Expression and Regulation Explorer

PURE is an interpretable framework designed to construct Gene Regulatory Networks (GRNs) and identify key transcription factors (TFs) in plants.

By integrating co-expression patterns, sequence motifs, and orthology-projected in vivo binding evidence, PURE overcomes regulatory data sparsity in non-model species. It employs interpretability-first machine learning (CatBoost + SHAP) to decode transcriptomic programs, allowing researchers to prioritize high-confidence regulators governing stress responses, development, and specific metabolic pathways.